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1

Reassessing the Role of Type II Toxin-Antitoxin Systems in Formation of Escherichia coli Type II Persister Cells

Goormaghtigh, Frédéric, Fraikin, Nathan, Putrinš, Marta, Hallaert, Thibaut, Hauryliuk, Vasili, Garcia-Pino, Abel, Sjödin, Andreas, Kasvandik, Sergo, Udekwu, Klas, Tenson, Tanel, Kaldalu, Niilo, Van Me

Journal:

Year:

2018

Language:

english

File:

PDF, 1.84 MB

english, 2018

2

Recent functional insights into the role of (p)ppGpp in bacterial physiology

Hauryliuk, Vasili, Atkinson, Gemma C., Murakami, Katsuhiko S., Tenson, Tanel, Gerdes, Kenn

Journal:

Nature Reviews Microbiology

Year:

2015

Language:

english

File:

PDF, 740 KB

english, 2015

3

Structural basis for (p)ppGpp synthesis by the Staphylococcus aureus small alarmone synthetase RelP

Manav, Melek Cemre, Beljantseva, Jelena, Bojer, Martin Saxtorph, Tenson, Tanel, Ingmer, Hanne, Hauryliuk, Vasili, Brodersen, Ditlev Egeskov

Journal:

Journal of Biological Chemistry

Year:

2018

Language:

english

File:

PDF, 3.17 MB

english, 2018

4

An ancient family of SelB elongation factor-like proteins with a broad but disjunct distribution across archaea

Gemma C Atkinson, Vasili Hauryliuk, Tanel Tenson

Journal:

BMC Evolutionary Biology

Year:

2011

Language:

english

File:

PDF, 1.20 MB

english, 2011

5

Guanine-nucleotide exchange on ribosome-bound elongation factor G initiates the translocation of tRNAs

Andrey V Zavialov, Vasili V Hauryliuk, Måns Ehrenberg

Journal:

Journal of Biology

Year:

2005

Language:

english

File:

PDF, 4.30 MB

english, 2005

6

Evolution of translational machinery: Could translation termination come into being before elongation?

Vasili Hauryliuk

Journal:

Journal of Theoretical Biology

Year:

2007

Language:

english

File:

PDF, 201 KB

english, 2007

7

Does the ribosome have initiation and elongation modes of translation?

Tanel Tenson, Vasili Hauryliuk

Journal:

Molecular Microbiology

Year:

2009

Language:

english

File:

PDF, 134 KB

english, 2009

8

Structure of the Dom34–Hbs1 complex and implications for no-go decay

Chen, Liming, Muhlrad, Denise, Hauryliuk, Vasili, Cheng, Zhihong, Lim, Meng Kiat, Shyp, Viktoriya, Parker, Roy, Song, Haiwei

Journal:

Nature Structural and Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.71 MB

english, 2010

9

Positive allosteric feedback regulation of the stringent response enzyme RelA by its product

Shyp, Viktoriya, Tankov, Stoyan, Ermakov, Andrey, Kudrin, Pavel, English, Brian P, Ehrenberg, Måns, Tenson, Tanel, Elf, Johan, Hauryliuk, Vasili

Journal:

Year:

2012

Language:

english

File:

PDF, 507 KB

english, 2012

10

Evolution of nonstop, no-go and nonsense-mediated mRNA decay and their termination factor-derived components

Gemma C Atkinson, Sandra L Baldauf, Vasili Hauryliuk

Journal:

BMC Evolutionary Biology

Year:

2008

Language:

english

File:

PDF, 1.15 MB

english, 2008

11

Class-1 release factor eRF1 promotes GTP binding by class-2 release factor eRF3

Vasili Hauryliuk, Andrey Zavialov, Lev Kisselev, Måns Ehrenberg

Journal:

Year:

2006

Language:

english

File:

PDF, 891 KB

english, 2006

12

Thermodynamics of GTP and GDP Binding to Bacterial Initiation Factor 2 Suggests Two Types of Structural Transitions

Vasili Hauryliuk, Vladimir A. Mitkevich, Albena Draycheva, Stoyan Tankov, Viktoriya Shyp, Andrey Ermakov, Alexandra A. Kulikova, Alexander A. Makarov, Mans Ehrenberg

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 254 KB

english, 2009

13

Thermodynamic Characterization of ppGpp Binding to EF-G or IF2 and of Initiator tRNA Binding to Free IF2 in the Presence of GDP, GTP, or ppGpp

Vladimir A. Mitkevich, Andrey Ermakov, Alexandra A. Kulikova, Stoyan Tankov, Viktoriya Shyp, Aksel Soosaar, Tanel Tenson, Alexander A. Makarov, Mans Ehrenberg, Vasili Hauryliuk

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 275 KB

english, 2010

14

Splitting of the Posttermination Ribosome into Subunits by the Concerted Action of RRF and EF-G

Andrey V. Zavialov, Vasili V. Hauryliuk, Måns Ehrenberg

Journal:

Year:

2005

Language:

english

File:

PDF, 567 KB

english, 2005

15

Two-Step Selection of mRNAs in Initiation of Protein Synthesis

Vasili Hauryliuk, Mans Ehrenberg

Journal:

Year:

2006

Language:

english

File:

PDF, 44 KB

english, 2006

16

Mechanism of tetracycline resistance by ribosomal protection protein Tet(O)

Li, Wen, Atkinson, Gemma C., Thakor, Nehal S., Allas, Ülar, Lu, Chuao-chao, Chan, Kwok-Yan, Tenson, Tanel, Schulten, Klaus, Wilson, Kevin S., Hauryliuk, Vasili, Frank, Joachim

Journal:

Nature Communications

Year:

2013

Language:

english

File:

PDF, 3.12 MB

english, 2013

17

Cofactor Dependent Conformational Switching of GTPases

Hauryliuk, Vasili, Hansson, Sebastian, Ehrenberg, Måns

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 327 KB

english, 2008

18

Mitochondrial translation initiation machinery: Conservation and diversification

Kuzmenko, Anton, Atkinson, Gemma C., Levitskii, Sergey, Zenkin, Nikolay, Tenson, Tanel, Hauryliuk, Vasili, Kamenski, Piotr

Journal:

Year:

2014

Language:

english

File:

PDF, 2.17 MB

english, 2014

19

Single Molecule Tracking Inside Individual Living Bacterial Cells

English, Brian P., Sanamrad, Arash, Hauryliuk, Vasili, Dekker, Nynke, Elf, Johan

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 32 KB

english, 2010

20

An evolutionary ratchet leading to loss of elongation factors in eukaryotes

Atkinson, Gemma C, Kuzmenko, Anton, Chicherin, Ivan, Soosaar, Axel, Tenson, Tanel, Carr, Martin, Kamenski, Piotr, Hauryliuk, Vasili

Journal:

BMC Evolutionary Biology

Year:

2014

Language:

english

File:

PDF, 1.66 MB

english, 2014

21

Single-molecule investigations of the stringent response machinery in living bacterial cells

Brian P. English, Vasili Hauryliuk, Arash Sanamrad, Stoyan Tankov, Nynke H. Dekker and Johan Elf

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 515 KB

english, 2011

22

GTPases IF2 and EF-G bind GDP and the SRL RNA in a mutually exclusive manner

Mitkevich, Vladimir A., Shyp, Viktoriya, Petrushanko, Irina Yu., Soosaar, Aksel, Atkinson, Gemma C., Tenson, Tanel, Makarov, Alexander A., Hauryliuk, Vasili

Journal:

Scientific Reports

Year:

2012

Language:

english

File:

PDF, 575 KB

english, 2012

23

Fusidic Acid Targets Elongation Factor G in Several Stages of Translocation on the Bacterial Ribosome

Borg, Anneli, Holm, Mikael, Shiroyama, Ikue, Hauryliuk, Vasili, Pavlov, Michael, Sanyal, Suparna, Ehrenberg, Måns

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 2.23 MB

english, 2015

24

Single molecule tracking fluorescence microscopy in mitochondria reveals highly dynamic but confined movement of Tom40

Kuzmenko, Anton, Tankov, Stoyan, English, Brian P., Tarassov, Ivan, Tenson, Tanel, Kamenski, Piotr, Elf, Johan, Hauryliuk, Vasili

Journal:

Scientific Reports

Year:

2011

Language:

english

File:

PDF, 908 KB

english, 2011

25

From (p)ppGpp to (pp)pGpp: Characterization of Regulatory Effects of pGpp Synthesized by the Small Alarmone Synthetase of Enterococcus faecalis

Gaca, Anthony O., Kudrin, Pavel, Colomer-Winter, Cristina, Beljantseva, Jelena, Liu, Kuanqing, Anderson, Brent, Wang, Jue D., Rejman, Dominik, Potrykus, Katarzyna, Cashel, Michael, Hauryliuk, Vasili,

Journal:

Journal of Bacteriology

Year:

2015

Language:

english

File:

PDF, 9.06 MB

english, 2015

26

The stringent factor RelA adopts an open conformation on the ribosome to stimulate ppGpp synthesis

Arenz, Stefan, Abdelshahid, Maha, Sohmen, Daniel, Payoe, Roshani, Starosta, Agata L., Berninghausen, Otto, Hauryliuk, Vasili, Beckmann, Roland, Wilson, Daniel N.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.72 MB

english, 2016

27

Persisters—as elusive as ever

Kaldalu, Niilo, Hauryliuk, Vasili, Tenson, Tanel

Journal:

Applied Microbiology and Biotechnology

Year:

2016

Language:

english

File:

PDF, 484 KB

english, 2016

28

Composition of the outgrowth medium modulates wake-up kinetics and ampicillin sensitivity of stringent and relaxed Escherichia coli

Varik, Vallo, Oliveira, Sofia Raquel Alves, Hauryliuk, Vasili, Tenson, Tanel

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 988 KB

english, 2016

29

Aim-less translation: loss of Saccharomyces cerevisiae mitochondrial translation initiation factor mIF3/Aim23 leads to unbalanced protein synthesis

Kuzmenko, Anton, Derbikova, Ksenia, Salvatori, Roger, Tankov, Stoyan, Atkinson, Gemma C., Tenson, Tanel, Ott, Martin, Kamenski, Piotr, Hauryliuk, Vasili

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.46 MB

english, 2016

30

Auxotrophy-based High Throughput Screening assay for the identification of Bacillus subtilis stringent response inhibitors

Andresen, Liis, Varik, Vallo, Tozawa, Yuzuru, Jimmy, Steffi, Lindberg, Stina, Tenson, Tanel, Hauryliuk, Vasili

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 536 KB

english, 2016

31

Antibacterial activity of the nitrovinylfuran G1 (Furvina) and its conversion products

Allas, Ülar, Toom, Lauri, Selyutina, Anastasia, Mäeorg, Uno, Medina, Ricardo, Merits, Andres, Rinken, Ago, Hauryliuk, Vasili, Kaldalu, Niilo, Tenson, Tanel

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 637 KB

english, 2016

32

Cationic bactericidal peptide 1018 does not specifically target the stringent response alarmone (p)ppGpp

Andresen, Liis, Tenson, Tanel, Hauryliuk, Vasili

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 406 KB

english, 2016

33

Subinhibitory Concentrations of Bacteriostatic Antibiotics Induce relA -Dependent and relA -Independent Tolerance to β-Lactams

Kudrin, Pavel, Varik, Vallo, Oliveira, Sofia Raquel Alves, Beljantseva, Jelena, Del Peso Santos, Teresa, Dzhygyr, Ievgen, Rejman, Dominik, Cava, Felipe, Tenson, Tanel, Hauryliuk, Vasili

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2017

Language:

english

File:

PDF, 1.99 MB

english, 2017

34

Molecular mutagenesis of ppGpp: turning a RelA activator into an inhibitor

Beljantseva, Jelena, Kudrin, Pavel, Jimmy, Steffi, Ehn, Marcel, Pohl, Radek, Varik, Vallo, Tozawa, Yuzuru, Shingler, Victoria, Tenson, Tanel, Rejman, Dominik, Hauryliuk, Vasili

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 974 KB

english, 2017

35

Negative allosteric regulation of Enterococcus faecalis small alarmone synthetase RelQ by single-stranded RNA

Beljantseva, Jelena, Kudrin, Pavel, Andresen, Liis, Shingler, Victoria, Atkinson, Gemma C., Tenson, Tanel, Hauryliuk, Vasili

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.32 MB

english, 2017

36

Small Alarmone Synthetases as novel bacterial RNA-binding proteins

Hauryliuk, Vasili, Atkinson, Gemma C.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.54 MB

english, 2017

37

HPLC-based quantification of bacterial housekeeping nucleotides and alarmone messengers ppGpp and pppGpp

Varik, Vallo, Oliveira, Sofia Raquel Alves, Hauryliuk, Vasili, Tenson, Tanel

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.89 MB

english, 2017

38

Antibiotic resistance ABCF proteins reset the peptidyl transferase centre of the ribosome to counter translational arrest

Murina, Victoriia, Kasari, Marje, Hauryliuk, Vasili, Atkinson, Gemma C

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 1.39 MB

english, 2018

39

The RelA/SpoT Homolog (RSH) Superfamily: Distribution and Functional Evolution of ppGpp Synthetases and Hydrolases across the Tree of Life

Atkinson, Gemma C., Tenson, Tanel, Hauryliuk, Vasili, Stiller, John W.

Journal:

Year:

2011

Language:

english

File:

PDF, 2.31 MB

english, 2011

40

Structural basis for antibiotic resistance mediated by the Bacillus subtilis ABCF ATPase VmlR

Crowe-McAuliffe, Caillan, Graf, Michael, Huter, Paul, Takada, Hiraku, Abdelshahid, Maha, Nováček, Jiří, Murina, Victoriia, Atkinson, Gemma C., Hauryliuk, Vasili, Wilson, Daniel N.

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.85 MB

english, 2018

41

Reply to Holden and Errington, “Type II Toxin-Antitoxin Systems and Persister Cells”

Goormaghtigh, Frédéric, Fraikin, Nathan, Putrinš, Marta, Hauryliuk, Vasili, Garcia-Pino, Abel, Udekwu, Klas, Tenson, Tanel, Kaldalu, Niilo, Van Melderen, Laurence, Storz, Gisela

Journal:

Year:

2018

Language:

english

File:

PDF, 143 KB

english, 2018

42

Elimination of Ribosome Inactivating Factors Improves the Efficiency of Bacillus subtilis and Saccharomyces cerevisiae Cell-Free Translation Systems

Brodiazhenko, Tetiana, Johansson, Marcus J. O., Takada, Hiraku, Nissan, Tracy, Hauryliuk, Vasili, Murina, Victoriia

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 1.58 MB

english, 2018

43

Ribosome profiling analysis of eEF3-depleted Saccharomyces cerevisiae

Kasari, Villu, Margus, Tõnu, Atkinson, Gemma C., Johansson, Marcus J. O., Hauryliuk, Vasili

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 2.40 MB

english, 2019

44

Analysis of nucleotide pools in bacteria using HPLC-MS in HILIC mode

Zborníková, Eva, Knejzlík, Zdeněk, Hauryliuk, Vasili, Krásný, Libor, Rejman, Dominik

Journal:

Year:

2019

Language:

english

File:

PDF, 943 KB

english, 2019

45

The Rel stringent factor from Thermus thermophilus : crystallization and X-ray analysis

Van Nerom, Katleen, Tamman, Hedvig, Takada, Hiraku, Hauryliuk, Vasili, Garcia-Pino, Abel

Journal:

Acta Crystallographica Section F Structural Biology Communications

Year:

2019

Language:

english

File:

PDF, 1.81 MB

english, 2019

46

The C-Terminal RRM/ACT Domain Is Crucial for Fine-Tuning the Activation of âLongâ RelA-SpoT Homolog Enzymes by Ribosomal Complexes

Takada, Hiraku, Roghanian, Mohammad, Murina, Victoriia, Dzhygyr, Ievgen, Murayama, Rikinori, Akanuma, Genki, Atkinson, Gemma C., Garcia-Pino, Abel, Hauryliuk, Vasili

Journal:

Frontiers in Microbiology

Year:

2020

File:

PDF, 4.66 MB

2020

47

A nucleotide-switch mechanism mediates opposing catalytic activities of Rel enzymes

Tamman, Hedvig, Van Nerom, Katleen, Takada, Hiraku, Vandenberk, Niels, Scholl, Daniel, Polikanov, Yury, Hofkens, Johan, Talavera, Ariel, Hauryliuk, Vasili, Hendrix, Jelle, Garcia-Pino, Abel

Journal:

Nature Chemical Biology

Year:

2020

File:

PDF, 4.59 MB

2020

48

Target protection as a key antibiotic resistance mechanism

Wilson, Daniel N., Hauryliuk, Vasili, Atkinson, Gemma C., OâNeill, Alex J.

Journal:

Nature Reviews Microbiology

Year:

2020

File:

PDF, 2.58 MB

2020

49

In Vitro Studies of Persister Cells

Kaldalu, Niilo, Hauryliuk, Vasili, Turnbull, Kathryn Jane, La Mensa, Agnese, PutrinÅ¡, Marta, Tenson, Tanel

Journal:

Microbiology and Molecular Biology Reviews

Year:

2020

File:

PDF, 2.21 MB

2020

50

Structural Basis for Bacterial Ribosome-Associated Quality Control by RqcH and RqcP

Crowe-McAuliffe, Caillan, Takada, Hiraku, Murina, Victoriia, Polte, Christine, Kasvandik, Sergo, Tenson, Tanel, Ignatova, Zoya, Atkinson, Gemma C., Wilson, Daniel N., Hauryliuk, Vasili

Journal:

Year:

2020

File:

PDF, 395 KB

2020

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